The section on the extra 40 paces for F troops doesn't say it excludes Rout moves, it just doesn't list them there.
So a Flee move for Kn(F) is 240p. A rout move distance isn't specified.
Later on it says that a Rout move is twice a flee move, so it's 480 paces.
I don't see a contradiction, unless you are trying to find one hard and are willing to read the first list as being exclusive.
It would be an idea in the next version to add it in to the list for completeness though, I agree.
The contrary example is a pursuit move. That also isn't in the list, and is defined elsewhere as being between at least a base depth and no more than a base width. Because it isn't mentioned in the list, and isn't based on a move that is in the list, it doesn't get 40 paces added on.
Toby